<?xml version="1.0" encoding="utf-8"?>
<h:html xmlns="http://www.w3.org/2002/xforms" xmlns:h="http://www.w3.org/1999/xhtml" xmlns:ev="http://www.w3.org/2001/xml-events" xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns:jr="http://openrosa.org/javarosa" xmlns:orx="http://openrosa.org/xforms" xmlns:odk="http://www.opendatakit.org/xforms">
  <h:head>
    <h:title>Occupation and Community Exposure to AMR in Dumpsites</h:title>
    <model odk:xforms-version="1.0.0">
      <instance>
        <data id="occupation_and_community_exposure_to_amr_in_dumpsites" version="29052026.01">
          <formhub>
            <uuid/>
          </formhub>
          <first_name_authors/>
          <study_doi/>
          <year_of_publication/>
          <country_where_study_conducted/>
          <country_where_study_conducted_other/>
          <study_setting/>
          <study_design/>
          <study_design_other/>
          <sampling_strategy/>
          <sampling_strategy_other/>
          <dumpsite_type/>
          <dumpsite_type_other/>
          <one_health_domain/>
          <exposure_type/>
          <exposure_type_other/>
          <specimen_type/>
          <specimen_type_other/>
          <bacteria_group_studied/>
          <quality_control_strain/>
          <specific_bateria_g_positive_studied/>
          <specific_bateria_g_positive_studied_other/>
          <specific_bateria_g_negative_studied/>
          <specific_bateria_g_negative_studied_other/>
          <species_characterization/>
          <resistance_outcome/>
          <phenotypic_species_characterization/>
          <phenotypic_species_characterization_other/>
          <genotypic_species_characterization/>
          <genotypic_species_characterization_other/>
          <guideline_used/>
          <guideline_used_other/>
          <resistance_type/>
          <resistance_type_other/>
          <class_of_antimicrobia_resistant/>
          <class_of_antimicrobia_resistant_other/>
          <gender/>
          <age_group/>
          <meta>
            <instanceID/>
          </meta>
        </data>
      </instance>
      <instance id="dumpsite_type">
        <root>
          <item>
            <name>open_dumpsite</name>
            <label>Open dumpsite (Municipal Solid Waste dumpsite)</label>
          </item>
          <item>
            <name>controlled_dumpsite</name>
            <label>Controlled dumpsite</label>
          </item>
          <item>
            <name>sanitary_dumpsite</name>
            <label>Sanitary dumpsite</label>
          </item>
          <item>
            <name>open_burning_dumpsite</name>
            <label>Open burning dumpsite</label>
          </item>
          <item>
            <name>informal_community_dumpsite</name>
            <label>Informal/community dumpsite</label>
          </item>
          <item>
            <name>industrial_hazardous_waste_dumpsite</name>
            <label>Industrial/hazardous waste dumpsite</label>
          </item>
          <item>
            <name>other</name>
            <label>Other</label>
          </item>
        </root>
      </instance>
      <instance id="one_health_domain">
        <root>
          <item>
            <name>human_health_alone</name>
            <label>Human health alone</label>
          </item>
          <item>
            <name>human_animal_health</name>
            <label>Human-Animal health</label>
          </item>
          <item>
            <name>human_animal_environment_health</name>
            <label>Human-Animal-Environment health</label>
          </item>
        </root>
      </instance>
      <instance id="specimen_type">
        <root>
          <item>
            <name>stool</name>
            <label>Stool</label>
          </item>
          <item>
            <name>rectal_swab</name>
            <label>Rectal swab</label>
          </item>
          <item>
            <name>urine</name>
            <label>Urine</label>
          </item>
          <item>
            <name>blood</name>
            <label>Blood</label>
          </item>
          <item>
            <name>nasal_swab</name>
            <label>Nasal swab</label>
          </item>
          <item>
            <name>throat_swab</name>
            <label>Throat/oropharyngeal swab</label>
          </item>
          <item>
            <name>wound_swab</name>
            <label>wounds swab</label>
          </item>
          <item>
            <name>skin_swab</name>
            <label>Skin swab</label>
          </item>
          <item>
            <name>sputum</name>
            <label>Sputum</label>
          </item>
          <item>
            <name>other</name>
            <label>Other</label>
          </item>
        </root>
      </instance>
      <instance id="bacteria_studied">
        <root>
          <item>
            <name>g_positive</name>
            <label>Gram-positive</label>
          </item>
          <item>
            <name>g_negative</name>
            <label>Gram-negative</label>
          </item>
        </root>
      </instance>
      <instance id="species_characterization">
        <root>
          <item>
            <name>genotypic</name>
            <label>Genotypic</label>
          </item>
          <item>
            <name>phenotypic</name>
            <label>Phenotypic</label>
          </item>
        </root>
      </instance>
      <instance id="resistance_type">
        <root>
          <item>
            <name>multi_drug_resistance</name>
            <label>Multidrug resistance (at least 1 agents in &gt;=3 different classes)</label>
          </item>
          <item>
            <name>pan_drug_resistance</name>
            <label>Pandrug-resistant (all vailable classes)</label>
          </item>
          <item>
            <name>extensive_drug_resistance</name>
            <label>Extensively drug-resistant (Almost all, exept 1/2 classes)</label>
          </item>
          <item>
            <name>difficult_to_treat_resistance</name>
            <label>Difficult-to-treat resistance (all first-line)</label>
          </item>
          <item>
            <name>not_applicable</name>
            <label>Not Applicable</label>
          </item>
          <item>
            <name>other</name>
            <label>Other</label>
          </item>
        </root>
      </instance>
      <instance id="gender">
        <root>
          <item>
            <name>male</name>
            <label>Male</label>
          </item>
          <item>
            <name>female</name>
            <label>Female</label>
          </item>
          <item>
            <name>not_mentioned</name>
            <label>Not mentioned</label>
          </item>
        </root>
      </instance>
      <instance id="age_group">
        <root>
          <item>
            <name>neonates</name>
            <label>Neonates</label>
          </item>
          <item>
            <name>children</name>
            <label>Children</label>
          </item>
          <item>
            <name>adults</name>
            <label>Adults</label>
          </item>
        </root>
      </instance>
      <instance id="study_setting">
        <root>
          <item>
            <name>urban</name>
            <label>Urban</label>
          </item>
          <item>
            <name>periurban</name>
            <label>Peri-urban</label>
          </item>
          <item>
            <name>rural</name>
            <label>Rural</label>
          </item>
        </root>
      </instance>
      <instance id="sampling_strategy">
        <root>
          <item>
            <name>random</name>
            <label>Random</label>
          </item>
          <item>
            <name>convenience</name>
            <label>Convenience</label>
          </item>
          <item>
            <name>purposive</name>
            <label>Purposive</label>
          </item>
          <item>
            <name>stratified</name>
            <label>Stratified</label>
          </item>
          <item>
            <name>not_mentioned</name>
            <label>Not mentioned</label>
          </item>
          <item>
            <name>other</name>
            <label>Other</label>
          </item>
        </root>
      </instance>
      <instance id="resistance_outcome">
        <root>
          <item>
            <name>resistant</name>
            <label>Resistant</label>
          </item>
          <item>
            <name>susceptible</name>
            <label>Susceptible</label>
          </item>
        </root>
      </instance>
      <instance id="guideline_used">
        <root>
          <item>
            <name>clsi</name>
            <label>CLSI</label>
          </item>
          <item>
            <name>eucast</name>
            <label>EUCAST</label>
          </item>
          <item>
            <name>not_mentioned</name>
            <label>Not mentioned</label>
          </item>
          <item>
            <name>other</name>
            <label>Other</label>
          </item>
        </root>
      </instance>
      <bind nodeset="/data/first_name_authors" type="string"/>
      <bind nodeset="/data/study_doi" type="string"/>
      <bind nodeset="/data/year_of_publication" type="date" required="true()"/>
      <bind nodeset="/data/country_where_study_conducted" type="string" required="true()"/>
      <bind nodeset="/data/country_where_study_conducted_other" type="string" relevant="selected(../country_where_study_conducted, 'other')"/>
      <bind nodeset="/data/study_setting" type="string"/>
      <bind nodeset="/data/study_design" type="string" required="true()"/>
      <bind nodeset="/data/study_design_other" type="string" relevant="selected(../study_design, 'other')"/>
      <bind nodeset="/data/sampling_strategy" type="string" constraint="not(selected(., 'not_mentioned') and count-selected(.) &gt; 1)"/>
      <bind nodeset="/data/sampling_strategy_other" type="string" relevant="selected(../sampling_strategy, 'other')"/>
      <bind nodeset="/data/dumpsite_type" type="string" required="true()"/>
      <bind nodeset="/data/dumpsite_type_other" type="string" relevant="selected(../dumpsite_type, 'other')"/>
      <bind nodeset="/data/one_health_domain" type="string" required="true()"/>
      <bind nodeset="/data/exposure_type" type="string" required="true()"/>
      <bind nodeset="/data/exposure_type_other" type="string" relevant="selected(../exposure_type, 'other')"/>
      <bind nodeset="/data/specimen_type" type="string" relevant="selected( /data/study_design ,'cross_sectional_analytical') or selected( /data/study_design ,'randomised_control_trials') or selected( /data/study_design ,'non_randomised_trials')" required="true()"/>
      <bind nodeset="/data/specimen_type_other" type="string" relevant="selected(../specimen_type, 'other')"/>
      <bind nodeset="/data/bacteria_group_studied" type="string" relevant="selected( /data/study_design ,'cross_sectional_analytical') or selected( /data/study_design ,'randomised_control_trials') or selected( /data/study_design ,'non_randomised_trials')"/>
      <bind nodeset="/data/quality_control_strain" type="string" relevant="selected( /data/study_design ,'cross_sectional_analytical') or selected( /data/study_design ,'randomised_control_trials') or selected( /data/study_design ,'non_randomised_trials')"/>
      <bind nodeset="/data/specific_bateria_g_positive_studied" type="string" relevant="selected( /data/bacteria_group_studied ,'g_positive')" required="true()"/>
      <bind nodeset="/data/specific_bateria_g_positive_studied_other" type="string" relevant="selected(../specific_bateria_g_positive_studied, 'other')"/>
      <bind nodeset="/data/specific_bateria_g_negative_studied" type="string" relevant="selected( /data/bacteria_group_studied ,'g_negative')" required="true()"/>
      <bind nodeset="/data/specific_bateria_g_negative_studied_other" type="string" relevant="selected(../specific_bateria_g_negative_studied, 'other')"/>
      <bind nodeset="/data/species_characterization" type="string" relevant="selected( /data/study_design ,'cross_sectional_analytical') or selected( /data/study_design ,'randomised_control_trials') or selected( /data/study_design ,'non_randomised_trials')" required="true()"/>
      <bind nodeset="/data/resistance_outcome" type="string" relevant="selected( /data/study_design ,'cross_sectional_analytical') or selected( /data/study_design ,'randomised_control_trials') or selected( /data/study_design ,'non_randomised_trials')"/>
      <bind nodeset="/data/phenotypic_species_characterization" type="string" relevant="selected( /data/species_characterization ,'genotypic')" required="true()"/>
      <bind nodeset="/data/phenotypic_species_characterization_other" type="string" relevant="selected(../phenotypic_species_characterization, 'other')"/>
      <bind nodeset="/data/genotypic_species_characterization" type="string" relevant="selected( /data/species_characterization ,'phenotypic')" required="true()"/>
      <bind nodeset="/data/genotypic_species_characterization_other" type="string" relevant="selected(../genotypic_species_characterization, 'other')"/>
      <bind nodeset="/data/guideline_used" type="string" relevant="selected( /data/study_design ,'cross_sectional_analytical') or selected( /data/study_design ,'randomised_control_trials') or selected( /data/study_design ,'non_randomised_trials')" constraint="not(selected(., 'not_mentioned') and count-selected(.) &gt; 1)"/>
      <bind nodeset="/data/guideline_used_other" type="string" relevant="selected(../guideline_used, 'other')"/>
      <bind nodeset="/data/resistance_type" type="string" relevant="selected( /data/resistance_outcome ,'resistant')" constraint="not(selected(., 'not_applicable') and count-selected(.) &gt; 1)"/>
      <bind nodeset="/data/resistance_type_other" type="string" relevant="selected(../resistance_type, 'other')"/>
      <bind nodeset="/data/class_of_antimicrobia_resistant" type="string" relevant="selected( /data/resistance_outcome ,'resistant')" required="true()"/>
      <bind nodeset="/data/class_of_antimicrobia_resistant_other" type="string" relevant="selected(../class_of_antimicrobia_resistant, 'other')"/>
      <bind nodeset="/data/gender" type="string" constraint="not(selected(., 'not_mentioned') and count-selected(.) &gt; 1)"/>
      <bind nodeset="/data/age_group" type="string"/>
      <bind nodeset="/data/meta/instanceID" type="string" readonly="true()" jr:preload="uid"/>
      <bind nodeset="/data/formhub/uuid" type="string" calculate="'7ea726d7011941ae8d802f5cc66cb078'"/>
    </model>
  </h:head>
  <h:body>
    <input ref="/data/first_name_authors">
      <label>1. First author name</label>
      <hint>e.g., lusanji et al not Lusanji et al</hint>
    </input>
    <input ref="/data/study_doi">
      <label>2. Study DOI</label>
      <hint>if information re the study is missing, this will be used</hint>
    </input>
    <input ref="/data/year_of_publication" appearance="month-year">
      <label>3. Year of publication</label>
    </input>
    <select ref="/data/country_where_study_conducted" appearance="minimal search()">
      <label>4. Country/s where the study was conducted</label>
      <item>
        <label>Benin</label>
        <value>benin</value>
      </item>
      <item>
        <label>Burkina Faso</label>
        <value>burkina_faso</value>
      </item>
      <item>
        <label>Cabo Verde</label>
        <value>cabo_verde</value>
      </item>
      <item>
        <label>Côte d'Ivoire</label>
        <value>cote_divoire</value>
      </item>
      <item>
        <label>Gambia</label>
        <value>gambia</value>
      </item>
      <item>
        <label>Ghana</label>
        <value>ghana</value>
      </item>
      <item>
        <label>Guinea</label>
        <value>guinea</value>
      </item>
      <item>
        <label>Guinea-Bissau</label>
        <value>guinea_bissau</value>
      </item>
      <item>
        <label>Liberia</label>
        <value>liberia</value>
      </item>
      <item>
        <label>Mali</label>
        <value>mali</value>
      </item>
      <item>
        <label>Mauritania</label>
        <value>mauritania</value>
      </item>
      <item>
        <label>Niger</label>
        <value>niger</value>
      </item>
      <item>
        <label>Nigeria</label>
        <value>nigeria</value>
      </item>
      <item>
        <label>Senegal</label>
        <value>senegal</value>
      </item>
      <item>
        <label>Sierra Leone</label>
        <value>sierra_leone</value>
      </item>
      <item>
        <label>Togo</label>
        <value>togo</value>
      </item>
      <item>
        <label>Cameroon</label>
        <value>cameroon</value>
      </item>
      <item>
        <label>Central African Republic</label>
        <value>central_african_republic</value>
      </item>
      <item>
        <label>Chad</label>
        <value>chad</value>
      </item>
      <item>
        <label>Republic of the Congo</label>
        <value>republic_of_the_congo</value>
      </item>
      <item>
        <label>Democratic Republic of the Congo</label>
        <value>democratic_republic_of_the_congo</value>
      </item>
      <item>
        <label>Equatorial Guinea</label>
        <value>equatorial_guinea</value>
      </item>
      <item>
        <label>Gabon</label>
        <value>gabon</value>
      </item>
      <item>
        <label>São Tomé and Príncipe</label>
        <value>são_tomé_and_príncipe</value>
      </item>
      <item>
        <label>Burundi</label>
        <value>burundi</value>
      </item>
      <item>
        <label>Comoros</label>
        <value>comoros</value>
      </item>
      <item>
        <label>Djibouti</label>
        <value>djibouti</value>
      </item>
      <item>
        <label>Eritrea</label>
        <value>eritrea</value>
      </item>
      <item>
        <label>Ethiopia</label>
        <value>ethiopia</value>
      </item>
      <item>
        <label>Kenya</label>
        <value>kenya</value>
      </item>
      <item>
        <label>Madagascar</label>
        <value>madagascar</value>
      </item>
      <item>
        <label>Malawi</label>
        <value>malawi</value>
      </item>
      <item>
        <label>Mauritius</label>
        <value>mauritius</value>
      </item>
      <item>
        <label>Mozambique</label>
        <value>mozambique</value>
      </item>
      <item>
        <label>Rwanda</label>
        <value>rwanda</value>
      </item>
      <item>
        <label>Seychelles</label>
        <value>seychelles</value>
      </item>
      <item>
        <label>Somalia</label>
        <value>somalia</value>
      </item>
      <item>
        <label>South Sudan</label>
        <value>south_sudan</value>
      </item>
      <item>
        <label>Tanzania</label>
        <value>tanzania</value>
      </item>
      <item>
        <label>Uganda</label>
        <value>uganda</value>
      </item>
      <item>
        <label>Zambia</label>
        <value>zambia</value>
      </item>
      <item>
        <label>Zimbabwe</label>
        <value>zimbabwe</value>
      </item>
      <item>
        <label>Angola</label>
        <value>angola</value>
      </item>
      <item>
        <label>Botswana</label>
        <value>botswana</value>
      </item>
      <item>
        <label>Eswatini</label>
        <value>eswatini</value>
      </item>
      <item>
        <label>Lesotho</label>
        <value>lesotho</value>
      </item>
      <item>
        <label>Namibia</label>
        <value>namibia</value>
      </item>
      <item>
        <label>South Africa</label>
        <value>south_africa</value>
      </item>
      <item>
        <label>Other</label>
        <value>other</value>
      </item>
    </select>
    <input ref="/data/country_where_study_conducted_other">
      <label>Specify other.</label>
    </input>
    <select ref="/data/study_setting">
      <label>5a. Study setting</label>
      <itemset nodeset="instance('study_setting')/root/item">
        <value ref="name"/>
        <label ref="label"/>
      </itemset>
    </select>
    <select ref="/data/study_design" appearance="minimal search()">
      <label>5b. Study design</label>
      <item>
        <label>Cross-sectional survey</label>
        <value>cross_sectional_survey</value>
      </item>
      <item>
        <label>Cross-sectional analytical</label>
        <value>cross_sectional_analytical</value>
      </item>
      <item>
        <label>Case-control studies</label>
        <value>case_control</value>
      </item>
      <item>
        <label>Cohort studies</label>
        <value>cohort_studies</value>
      </item>
      <item>
        <label>Randomized Controlled Trials</label>
        <value>randomised_control_trials</value>
      </item>
      <item>
        <label>Non-randomized trials</label>
        <value>non_randomised_trials</value>
      </item>
      <item>
        <label>Ethnography studies</label>
        <value>ethnography_studies</value>
      </item>
      <item>
        <label>Other</label>
        <value>other</value>
      </item>
    </select>
    <input ref="/data/study_design_other">
      <label>Specify other.</label>
    </input>
    <select ref="/data/sampling_strategy">
      <label>5c. Sampling strategy</label>
      <itemset nodeset="instance('sampling_strategy')/root/item">
        <value ref="name"/>
        <label ref="label"/>
      </itemset>
    </select>
    <input ref="/data/sampling_strategy_other">
      <label>Specify other.</label>
    </input>
    <select ref="/data/dumpsite_type">
      <label>6. Dumpsite type</label>
      <itemset nodeset="instance('dumpsite_type')/root/item">
        <value ref="name"/>
        <label ref="label"/>
      </itemset>
    </select>
    <input ref="/data/dumpsite_type_other">
      <label>Specify other.</label>
    </input>
    <select1 ref="/data/one_health_domain">
      <label>7. One Health domain combination studied</label>
      <itemset nodeset="instance('one_health_domain')/root/item">
        <value ref="name"/>
        <label ref="label"/>
      </itemset>
    </select1>
    <select ref="/data/exposure_type" appearance="minimal search()">
      <label>8. Exposure type</label>
      <item>
        <label>Contact with waste-contaminated soil</label>
        <value>contact_with_waste_contaminated_soil</value>
      </item>
      <item>
        <label>Contact with waste-contaminated water</label>
        <value>contact_with_waste_contaminated_water</value>
      </item>
      <item>
        <label>Inhalation of bioaerosols from decomposing waste</label>
        <value>inhalation_of_bioaerosols_from_decomposing_waste</value>
      </item>
      <item>
        <label>Sorting, collecting, or transporting mixed municipal waste</label>
        <value>sorting_collecting_or_transporting_mixed_municipal_waste</value>
      </item>
      <item>
        <label>Cuts or needle-stick injuries from sharps-contaminated waste</label>
        <value>cuts_or_needle_injuries_from__sharps_contaminated_waste</value>
      </item>
      <item>
        <label>Exposure to smoke containing resistant bacteria and genetic material</label>
        <value>exposure_to_smoke_containg_resistant_bacteria_and_genetic_material</value>
      </item>
      <item>
        <label>Consumption of contaminated food</label>
        <value>consumption_of_contaminated_food</value>
      </item>
      <item>
        <label>Contact with stray animals</label>
        <value>contact_with_stray_animals</value>
      </item>
      <item>
        <label>Own livestock grazing on dumpsites</label>
        <value>own_livestock_grazing_on_dumpsites</value>
      </item>
      <item>
        <label>Lack of protective equipment</label>
        <value>lack_of_protective_equipment</value>
      </item>
      <item>
        <label>Living in makeshift shelters within dumpsite zones</label>
        <value>living_in_makeshift_within_dumpsite_zones</value>
      </item>
      <item>
        <label>Other</label>
        <value>other</value>
      </item>
    </select>
    <input ref="/data/exposure_type_other">
      <label>Specify other.</label>
    </input>
    <select ref="/data/specimen_type">
      <label>9. Specimen type</label>
      <itemset nodeset="instance('specimen_type')/root/item">
        <value ref="name"/>
        <label ref="label"/>
      </itemset>
    </select>
    <input ref="/data/specimen_type_other">
      <label>Specify other.</label>
    </input>
    <select ref="/data/bacteria_group_studied">
      <label>10. Bacterial group studied</label>
      <itemset nodeset="instance('bacteria_studied')/root/item">
        <value ref="name"/>
        <label ref="label"/>
      </itemset>
    </select>
    <input ref="/data/quality_control_strain">
      <label>11. Quality control strains used</label>
      <hint>write in uppercase e.g., Escherichia coli ATCC 25922</hint>
    </input>
    <select ref="/data/specific_bateria_g_positive_studied" appearance="minimal search()">
      <label>12a. Specific Gram-positive bacterial species studied</label>
      <item>
        <label>Staphylococcus aureus</label>
        <value>staphylococcus_aureus</value>
      </item>
      <item>
        <label>Staphylococcus epidermidis</label>
        <value>staphylococcus_epidermidis</value>
      </item>
      <item>
        <label>Enterococcus faecalis</label>
        <value>enterococcus_faecalis</value>
      </item>
      <item>
        <label>Enterococcus faecium</label>
        <value>enterococcus_faecium</value>
      </item>
      <item>
        <label>Streptococcus pneumoniae</label>
        <value>streptococcus_pneumoniae</value>
      </item>
      <item>
        <label>Streptococcus pyogenes</label>
        <value>streptococcus_pyogenes</value>
      </item>
      <item>
        <label>Streptococcus agalactiae</label>
        <value>streptococcus_agalactiae</value>
      </item>
      <item>
        <label>Clostridioides difficile</label>
        <value>clostridioides_difficile</value>
      </item>
      <item>
        <label>Bacillus cereus</label>
        <value>bacillus_cereus</value>
      </item>
      <item>
        <label>Listeria monocytogenes</label>
        <value>listeria_monocytogenes</value>
      </item>
      <item>
        <label>Corynebacterium diphtheriae</label>
        <value>corynebacterium_diphtheriae</value>
      </item>
      <item>
        <label>Clostridium perfringens</label>
        <value>clostridium_perfringens</value>
      </item>
      <item>
        <label>Enterococcus spp</label>
        <value>enterococcus_spp</value>
      </item>
      <item>
        <label>Bacillus spp</label>
        <value>bacillus_spp</value>
      </item>
      <item>
        <label>Streptococcus spp</label>
        <value>streptococcus_spp</value>
      </item>
      <item>
        <label>Staphylococcus spp</label>
        <value>staphylococcus_spp</value>
      </item>
      <item>
        <label>Other</label>
        <value>other</value>
      </item>
    </select>
    <input ref="/data/specific_bateria_g_positive_studied_other">
      <label>Specify other.</label>
    </input>
    <select ref="/data/specific_bateria_g_negative_studied" appearance="minimal search()">
      <label>12b. Specific Gram-negative bacterial species studied</label>
      <item>
        <label>Escherichia coli</label>
        <value>escherichia_coli</value>
      </item>
      <item>
        <label>Klebsiella pneumoniae</label>
        <value>klebsiella_pneumoniae</value>
      </item>
      <item>
        <label>Salmonella enterica</label>
        <value>salmonella_enterica</value>
      </item>
      <item>
        <label>Shigella spp</label>
        <value>shigella_spp</value>
      </item>
      <item>
        <label>Proteus mirabilis</label>
        <value>proteus_mirabilis</value>
      </item>
      <item>
        <label>Enterobacter cloacae</label>
        <value>enterobacter_cloacae</value>
      </item>
      <item>
        <label>Citrobacter freundii</label>
        <value>citrobacter_freundii</value>
      </item>
      <item>
        <label>Serratia marcescens</label>
        <value>serratia_marcescens</value>
      </item>
      <item>
        <label>Pseudomonas aeruginosa</label>
        <value>pseudomonas_aeruginosa</value>
      </item>
      <item>
        <label>Acinetobacter baumannii</label>
        <value>acinetobacter_baumannii</value>
      </item>
      <item>
        <label>Stenotrophomonas maltophilia</label>
        <value>stenotrophomonas_maltophilia</value>
      </item>
      <item>
        <label>Vibrio cholerae</label>
        <value>vibrio_cholerae</value>
      </item>
      <item>
        <label>Aeromonas hydrophila</label>
        <value>aeromonas_hydrophila</value>
      </item>
      <item>
        <label>Haemophilus influenzae</label>
        <value>haemophilus_influenzae</value>
      </item>
      <item>
        <label>Neisseria gonorrhoeae</label>
        <value>neisseria_gonorrhoeae</value>
      </item>
      <item>
        <label>Campylobacter jejuni</label>
        <value>campylobacter_jejuni</value>
      </item>
      <item>
        <label>Salmonella spp</label>
        <value>salmonella_spp</value>
      </item>
      <item>
        <label>Klebsiella spp</label>
        <value>klebsiella_spp</value>
      </item>
      <item>
        <label>Enterobacter spp</label>
        <value>enterobacter_spp</value>
      </item>
      <item>
        <label>Citrobacter spp</label>
        <value>citrobacter_spp</value>
      </item>
      <item>
        <label>Campylobacter spp</label>
        <value>campylobacter_spp</value>
      </item>
      <item>
        <label>Other</label>
        <value>other</value>
      </item>
    </select>
    <input ref="/data/specific_bateria_g_negative_studied_other">
      <label>Specify other.</label>
    </input>
    <select ref="/data/species_characterization">
      <label>13. Species characterization of resistance</label>
      <itemset nodeset="instance('species_characterization')/root/item">
        <value ref="name"/>
        <label ref="label"/>
      </itemset>
    </select>
    <select ref="/data/resistance_outcome">
      <label>14. Resistance outcomes reported</label>
      <hint>If any resistance has been reported</hint>
      <itemset nodeset="instance('resistance_outcome')/root/item">
        <value ref="name"/>
        <label ref="label"/>
      </itemset>
    </select>
    <select ref="/data/phenotypic_species_characterization" appearance="minimal search()">
      <label>15a. Phenotypic Method used for characterization of resistance</label>
      <item>
        <label>Kirby–Bauer disc diffusion test</label>
        <value>kirby_bauer_disk_diffusion_test</value>
      </item>
      <item>
        <label>Broth microdilution (for Minimum Inhibitory Concentration)</label>
        <value>broth_microdilution</value>
      </item>
      <item>
        <label>Agar dilution</label>
        <value>agar_dilution</value>
      </item>
      <item>
        <label>E-test</label>
        <value>e_test</value>
      </item>
      <item>
        <label>VITEK 2</label>
        <value>vitek_avitek_2</value>
      </item>
      <item>
        <label>BD Phoenix</label>
        <value>bd_aphoenix</value>
      </item>
      <item>
        <label>MicroScan WalkAway</label>
        <value>microscan_aalkaway</value>
      </item>
      <item>
        <label>Microtiter plate crystal violet assay (for biofilm)</label>
        <value>microtiter_plate_crystal_violate_assay</value>
      </item>
      <item>
        <label>Other</label>
        <value>other</value>
      </item>
    </select>
    <input ref="/data/phenotypic_species_characterization_other">
      <label>Specify other.</label>
    </input>
    <select ref="/data/genotypic_species_characterization" appearance="minimal search()">
      <label>15b. Genotypic Method used for characterization of resistance</label>
      <item>
        <label>Conventional PCR (singleplex PCR)</label>
        <value>conventional_pcr</value>
      </item>
      <item>
        <label>Multiplex PCR</label>
        <value>multiplex_pcr</value>
      </item>
      <item>
        <label>Real-time PCR (qPCR)</label>
        <value>real_time_pcr</value>
      </item>
      <item>
        <label>Reverse transcription PCR</label>
        <value>reverse_transcription_pct</value>
      </item>
      <item>
        <label>Allele-specific PCR</label>
        <value>allele_specific_pcr</value>
      </item>
      <item>
        <label>Sanger sequencing</label>
        <value>sanger_sequencing</value>
      </item>
      <item>
        <label>Whole Genome Sequencing</label>
        <value>whole_genome_sequencing</value>
      </item>
      <item>
        <label>CRISPR-Cas assays</label>
        <value>crispr_cas_assays</value>
      </item>
      <item>
        <label>Shotgun metagenomic sequencing</label>
        <value>shortgun_metagenomic_sequencing</value>
      </item>
      <item>
        <label>Other</label>
        <value>other</value>
      </item>
    </select>
    <input ref="/data/genotypic_species_characterization_other">
      <label>Specify other.</label>
    </input>
    <select ref="/data/guideline_used">
      <label>16. Interpretation guideline for resistance used</label>
      <itemset nodeset="instance('guideline_used')/root/item">
        <value ref="name"/>
        <label ref="label"/>
      </itemset>
    </select>
    <input ref="/data/guideline_used_other">
      <label>Specify other.</label>
    </input>
    <select ref="/data/resistance_type">
      <label>17. Resistance type reported</label>
      <itemset nodeset="instance('resistance_type')/root/item">
        <value ref="name"/>
        <label ref="label"/>
      </itemset>
    </select>
    <input ref="/data/resistance_type_other">
      <label>Specify other.</label>
    </input>
    <select ref="/data/class_of_antimicrobia_resistant" appearance="minimal search()">
      <label>18. Class of antimicrobial agents the bacteria is resistant against</label>
      <item>
        <label>Beta lactams (Penicillins - Amoxicillin; Cephalosporins - Cefepime, Ceftriaxone; Carbapenems - Meropenem; Monobactams - Aztreonam)</label>
        <value>beta_lactams</value>
      </item>
      <item>
        <label>Aminoglycosides (Gentamicin, Amikacin, Streptomycin)</label>
        <value>aminoglycosides</value>
      </item>
      <item>
        <label>Macrolides (Azithromycin, Erythromycin, Clarithromycin)</label>
        <value>macrolides</value>
      </item>
      <item>
        <label>Tetracyclines (Tetracycline, Doxycycline, Minocycline)</label>
        <value>tetracyclines</value>
      </item>
      <item>
        <label>Fluoroquinolones (Ciprofloxacin, Levofloxacin, Ofloxacin, Moxifloxacin)</label>
        <value>fluoroquinolones</value>
      </item>
      <item>
        <label>Sulfonamides (Sulfamethoxazole + Trimethoprim, Sulfadiazine)</label>
        <value>sulfonamides</value>
      </item>
      <item>
        <label>Glycopeptides (Vancomycin, Teicoplanin)</label>
        <value>glycopeptides</value>
      </item>
      <item>
        <label>Lincosamides (Clindamycin, Lincomycin)</label>
        <value>lincosamides</value>
      </item>
      <item>
        <label>Oxazolidinones (Linezolid, Tedizolid)</label>
        <value>oxazolidinones</value>
      </item>
      <item>
        <label>Nitroimidazoles (Metronidazole, Tinidazole)</label>
        <value>nitroimidazoles</value>
      </item>
      <item>
        <label>Rifamycins (Rifampicin, Rifabutin)</label>
        <value>rifamycins</value>
      </item>
      <item>
        <label>Polypeptides (Bacitracin, Polymixin B, Colistin - Polymyxin E)</label>
        <value>polypeptides</value>
      </item>
      <item>
        <label>Cloramphenicol (Chloramphenicol)</label>
        <value>cloramphenicol</value>
      </item>
      <item>
        <label>Miscellaneous (Fosfomycin, Nitrofurantoin, Mupirocin)</label>
        <value>miscellaneous</value>
      </item>
      <item>
        <label>Other</label>
        <value>other</value>
      </item>
    </select>
    <input ref="/data/class_of_antimicrobia_resistant_other">
      <label>Specify other.</label>
    </input>
    <select ref="/data/gender">
      <label>19. Gender of the study population</label>
      <itemset nodeset="instance('gender')/root/item">
        <value ref="name"/>
        <label ref="label"/>
      </itemset>
    </select>
    <select ref="/data/age_group">
      <label>20. Age group of the study population</label>
      <itemset nodeset="instance('age_group')/root/item">
        <value ref="name"/>
        <label ref="label"/>
      </itemset>
    </select>
  </h:body>
</h:html>
